Sergei Pond / Observable

Sergei Pond

@spond

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Showing 1-30 of 118 notebooks

Comparing predicted vs observed evolution in SARS-CoV-2 genomes enabled by data from

Sep 16

Evidence of natural selection history operating on SARS-CoV-2 genomes enabled by…

Sep 8

Internal Node Labels with Phylotree

Aug 31

Visualizing BUSTED-PH analysis results

Aug 20

ACTIV-TRACE ILMN/ONT platform comparison analysis

Aug 19

ACTIV-TRACE platform comparison samples by the Galaxy team.

Aug 15

Frequency trends and selection detection of subsets of sites in SARS-CoV-2 genes in…

Aug 14

Combined view of sites which may be experiencing convergence in S/452 variant clades

Aug 12• 1

SARS-CoV-2 Research Contributions

Aug 10

Aug 6• 1

Comparing sets of called variants

Aug 6• 1

Proportional Venn

Aug 6• 1

ACTIV-TRACE sample analyses

Aug 2

Temporal evolution of selective pressures on SARS-CoV-2 genes

Jul 30• 1

Trends in haplotype frequencies in SARS-CoV-2 data from

Jul 26

Trends in haplotype background frequencies for mutations in SARS-CoV-2 data from

Jul 26

Compare coverages between mapped files

Jul 12

Frequency trends and selection detection of subsets of sites in SARS-CoV-2 genes

Jun 15

Jun 14

Jun 12

Frequency trends and selection detection of subsets of sites in SARS-CoV-2 genes

Jun 8

Intrahost allelic variant SARS-CoV-2 analysis for Estonian samples

May 19• 3

Visualizing MSS model results for Drosophila genes (take 2)

May 3

Visualizing selection analysis results for evolution of nCOV

Apr 25• 2

Visualizing MSS model results for Drosophila genes

Apr 25

Combined view of sites which may be experiencing convergence in N501Y clades

Apr 24

Selector with confirmation

Apr 21

Intrahost allelic variant SARS-CoV-2 analysis for Estonian samples

Apr 20• 3

Plotting amino-acid states on tree branches based on SLAC inference

Apr 7

Frequencies of SARS-CoV-2 key S1 mutations enabled by data from

Mar 10• 1

Showing 1-30 of 118 notebooks