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Hannah Verdonk

Passionate about biology, computers, and the intersection of the two.

Public notebooks

Showing all 21 notebooks
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DRHIP result viewer
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Hannah Verdonk
Sep 22• 1
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MSS codon genetic algorithm performance This notebook is a fork
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Hannah Verdonk
Apr 17, 2024• 5
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Visualizing SYNREV model fits and rate distributions for Drosophila subsets This notebook is a fork
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Hannah Verdonk
Mar 20, 2024•1
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Factor analysis mean loadings This notebook is a fork
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Hannah Verdonk
Jan 24, 2024
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Visualizing SYNREV model fits and rate distributions. This notebook is a fork
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Hannah Verdonk
Apr 25, 2024
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Enterobacteriaceae cluster comparison
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Hannah Verdonk
Dec 4, 2023
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Visualizing Enterobacteriaceae SYNREV model fits and rate distributions.
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Hannah Verdonk
Jan 9, 2024
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Dimensionality Reduction
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Hannah Verdonk
Nov 2, 2023
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BUSTED vs BUSTED-E
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Hannah Verdonk
Oct 23, 2023
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GA performance on Drosophila pre- and post-GA update
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Hannah Verdonk
Aug 23, 2023
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Plotting MSS GA model selection results This notebook is a fork
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Hannah Verdonk
Aug 18, 2023
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Make quick plots
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Hannah Verdonk
Jul 14, 2023
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Plotting MSS (amino-acid) GA model selection results This notebook is a fork
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Hannah Verdonk
Aug 18, 2023
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Visualizing MSS model results for Enterobacteriaceae genes This notebook is a fork
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Hannah Verdonk
Jun 17, 2023
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Visualizing MSS model results for Enterobacterales genes This notebook is a fork
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Hannah Verdonk
Sep 19, 2023
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Covariatiates with codon bias for codons assigned to different rate classes
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Hannah Verdonk
Oct 4, 2023
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MSS genetic algorithm performance
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Hannah Verdonk
Dec 1, 2022
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Visualizing MSS model results
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Hannah Verdonk
Dec 1, 2022
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Visualizing MSS model results for Drosophila genes This notebook is a fork
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Hannah Verdonk
Dec 3, 2022•2
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SYNREV-Codon: Drosophila
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Hannah Verdonk
Mar 8, 2023
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PREI Evolutionary imputation validation: This notebook is a fork
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Hannah Verdonk
May 9, 2022