2e:null 2f:["$","title",null,{"children":"Web Genomics | Carolyn Bremer | Observable"}] 34:T562,printTCGA = function(projectData) { let div = DOM.element('div') // set up the main object div.innerHTML='

TCGA Project types in GDC ()

TARGET Project types in GDC ()

TARGET Primary Sites()

' //formatting the titles above let ol=DOM.element('ol') // set up the sub-object which will contain our data div.appendChild(ol) //added sub-object to the main object let caseCount=0 projectData.data.hits.forEach(function(prj,i){ // for each hit (project) if ((/TRUE/.test(prj.released))) { //if the object is data from TCGA let li = DOM.element('li') // build up the header "li" (list item) li.innerHTML=`${prj.state}: ${prj.primary_site} (${prj.summary.case_count})` //formats all the blue headers caseCount=caseCount+prj.summary.case_count ol.appendChild(li) // append the header "li" to the larger object "ol" let ul = DOM.element('ul') // build up the bullets "ul" //case.disease_type.forEach(function(dtp){ // for each disease_type //let li = DOM.element('li') //li.style.fontSize='small' //li.innerHTML=dtp //ul.appendChild(li) // append one bullet "li" to the list of bullets "ul" //}) //li.appendChild(ul) // append the bullets "ul" to the header "li" } }) div.querySelector('#caseCountSpan').textContent=caseCount return div };37:[] 32:{"id":"de8d9fca8bef2ef5","slug":"untitled","title":"Web Genomics ","thumbnail":"941ddbf3280c99a3d5a1205d2092ffa53fd631ca52df59c5982cb849929b7459","access_level":"public","create_time":"$D2019-02-01T16:54:43.423Z","update_time":"$D2019-02-15T16:24:05.825Z","view_time":null,"first_public_time":"$D2019-02-08T03:05:17.489Z","has_unpublished_edits":null,"fork":false,"stars":0,"starred":false,"owner":{"type":"team","id":"28a6da27c183bdb3","login":"cgbrem","name":"Carolyn Bremer","avatar_url":"https://avatars-next.observableusercontent.com/500a1e6b2c9b0c835dd7a2f43e0360ac65fb942ba03c48c34538170a7c0bfb62","tier":"starter_2024"},"version":104,"publish_version":104,"role":null,"authored":false,"authors":[{"type":"individual","id":"5e7c37334c7f6e83","login":"cgbrem","name":"Carolyn 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University)*`\n","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":35,"value":"md`**Functions Used Below**`","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":16,"value":"projectData=(await fetch('https://api.gdc.cancer.gov/projects?fields=disease_type,name,program.name,project_id,summary.case_count&from=0&size=1000&sort=disease_type:asc')).json()\n","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":43,"value":"md`JSON used to send data\n\n**J**ava**S**cript **O**bject **N**otation (JSON)`","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":21,"value":"$34","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":95,"value":"md`\n*The \"TCGA\" section below is from Richard Moffit's Observable*\n\n`","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":24,"value":"printTCGA(projectData);","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":50,"value":"md`### TARGET List`","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":97,"value":"md`#### Replaced TCGA with TARGET\n\n`","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":52,"value":"$35","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":55,"value":"printTARGET(projectData);","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":57,"value":"md`### Print Primary Site Instead of Disease Type`","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":59,"value":"$36","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":66,"value":"printPrimary(projectData);","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":82,"value":"md`\n1. Figure out how to print primary site instead\n1. Figure out how to print out each case and bullets underneath with information about them\n1. Analyze based on top mutations of genes(/analysis\n/top_mutate\nd_genesby\nproject)\n\n\n`","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"}],"files":"$W37","stdlib":"1","titling":"auto"}} 33:"$32:body"