2c:null 2d:["$","title",null,{"children":"AssemblyDB Release Monitoring | Jonathon Keeney | Observable"}] 32:T47f,historyFiles = [ { version: "baseline", attachment: FileAttachment(".tsv") }, { version: "1.1", attachment: FileAttachment("v-1.1.tsv") }, { version: "1.15", attachment: FileAttachment("v-1.5.tsv") }, { version: "1.2", attachment: FileAttachment("v-1.20.tsv") }, { version: "1.2.5", attachment: FileAttachment("v-1.25.tsv") }, { version: "1.3", attachment: FileAttachment("v-1.30.tsv") }, { version: "1.3.5", attachment: FileAttachment("v-1.35.tsv") }, { version: "1.3.8", attachment: FileAttachment("v-1.38.tsv") }, { version: "1.4", attachment: FileAttachment("v-1.4.tsv") }, { version: "1.5", attachment: FileAttachment("v-1.5.tsv") }, { version: "1.6", attachment: FileAttachment("v-1.6.tsv") }, { version: "1.7", attachment: FileAttachment("v-1.7.tsv") }, { version: "1.8", attachment: FileAttachment("v-1.8.tsv") }, { version: "1.8.3", attachment: FileAttachment("assemblyQC_ARGOS_extended1.83.tsv") }, { version: "1.9", attachment: FileAttachment("v-1.9.tsv") }, ]33:Tbe1,makeHistoryTable = data => { const columns = [ "genome_assembly_id", "biosample", "taxonomy_id", "n50", "length", "rpkm" ]; // If a column is missing data, use empty values const normalizedData = data.map(row => Object.fromEntries( columns.map(column => [ column, Object.hasOwn(row, column) ? row[column] : "" ]) ) ); const hasNumber = value => value !== null && value !== undefined && value !== "" && Number.isFinite(Number(value)); const sparkbar = (column, exponent = 1) => { const values = normalizedData .map(row => row[column]) .filter(hasNumber) .map(Number); const maximum = d3.max(values); if (!(maximum > 0)) { return value => hasNumber(value) ? Number(value).toLocaleString("en-US") : ""; } const scale = d3.scalePow() .exponent(exponent) .domain([0, maximum]) .range([0, 100]) .clamp(true); return value => { if (!hasNumber(value)) return ""; const number = Number(value); const width = number === 0 ? 0 : Math.max(2, scale(number)); return html`

${number.toLocaleString("en-US")}

`; }; }; const table = Inputs.table(normalizedData, { columns, format: { n50: sparkbar("n50"), length: sparkbar("length", 3), rpkm: sparkbar("rpkm") }, sort: "length", reverse: true }); // Use the same proportional widths in every table (the percentages total 100%) const columnWidths = [ "24%", // genome_assembly_id "18%", // biosample "14%", // taxonomy_id "14%", // n50 "16%", // length "14%" // rpkm ]; const renderedTable = table.querySelector("table"); if (renderedTable) { renderedTable.style.width = "100%"; renderedTable.style.tableLayout = "fixed"; // Define row width and alignment for (const row of renderedTable.querySelectorAll("tr")) { [...row.children].forEach((cell, index) => { if (columnWidths[index]) { cell.style.width = columnWidths[index]; cell.style.maxWidth = columnWidths[index]; } // Value alignment cell.style.textAlign = index < 2 ? 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It has since been discontinued (monitoring is now carried out internally in [HIVE](https://hive.biochemistry.gwu.edu/)).","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"","database":"$undefined"},{"id":145,"value":"#### Sample approx.~ every 5 releases initially, then every 10","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"","database":"$undefined"},{"id":191,"value":"$32","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":182,"value":"historyData = Promise.all(\n historyFiles.map(async ({version, attachment}) => ({\n version,\n data: await attachment.tsv({typed: true})\n }))\n)","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":184,"value":"$33","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":187,"value":"html`

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Version ${version}

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\n `)}\n

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fileTable.columns[\"genome_assembly\"]","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":37,"value":"count = d3.count(fileTable)","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":46,"value":"viewof name = htl.html``","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"}],"files":"$W34","stdlib":"1"}} 31:"$30:body"