The avatar for @aaronge-2020
Aaron Ge
Public
Edited
Apr 24, 2023
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module = import("http://127.0.0.1:5500/main.js")
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mSigSDK = module.mSigSDK
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data = await mSigSDK.mSigPortal.mSigPortalData.getMutationalSignatureActivityData('PCAWG','WGS','COSMIC_v3_Signatures_GRCh37_SBS96','',100000000)
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mSigSDK.mSigPortal.mSigPortalPlots.plotSignatureActivityDataBy("testDiv", data, 'cancer');
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mSigSDK.mSigPortal.mSigPortalPlots.plotSignatureAssociations("associations", data, 'SBS1', 'SBS2')
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mSigSDK.mSigPortal.mSigPortalPlots.plotMSPrevalenceData("prevalence", data)
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mutSpecData = await mSigSDK.mSigPortal.mSigPortalData.getMutationalSpectrumData('PCAWG',null, 'WGS','','SBS', 96)
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processedData = mSigSDK.machineLearning.preprocessData(mutSpecData, data, "mSigPortal")
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results = mSigSDK.machineLearning.kFoldStratifiedCV(processedData.Xs,processedData.Ys)
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