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Alexander Lucaci
Public
Edited
Feb 1, 2024
Fork of Selection analyses of Mammalian BTG1
15
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schemeId = {
return NGL.ColormakerRegistry.addScheme(function (params) {
this.atomColor = function (atom) {
if(selected_sites[atom.residue.resno]) {
console.log("# Site: " + atom.residue.resno)
let site_color = "gray"; // gray for Neutral
console.log("Class: " + selected_sites[atom.residue.resno].class)
if (selected_sites[atom.residue.resno].class == "Purifying") {
site_color = "red";
}

if (selected_sites[atom.residue.resno].class == "Diversifying") {
site_color = "blue";
}

if (selected_sites[atom.residue.resno].class == "Invariable") {
site_color = "gray";
}

return color_hash[site_color];
//return color_hash[selected_sites[atom.residue.resno].color];
}
else {
// gray
//return 0x808080;
return color_hash["gray"]
}
}
})
}
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Plot.plot({
inset: 8,
grid: true,
color: {
legend: true,
},
marks: [
Plot.dot(protein_data["raw"], {x: "header", y: "seq_len"})
]
})
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tag = "Mammalian"
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gene = "BTG2"
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