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';\n}","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":839,"value":"viewof atlasTitle = html`${atlasH2}`","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":1329,"value":"

","pinned":false,"hidden":false,"mode":"html","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"","database":"$undefined"},{"id":866,"value":"renderer.domElement","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":1097,"value":"Based on the preliminary work by Chuncheng Zhang, PhD\n(chuncheng.zhang@ia.ac.cn)","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"","database":"$undefined"},{"id":1154,"value":"gltfExport = {\n const data = atlas.concat(brain);\n const exporter = new THREE.GLTFExporter();\n const gltf = await new Promise(resolve =>\n exporter.parse(data, resolve, {\n binary: false,\n truncateDrawRange: false\n })\n );\n const blob = new Blob([JSON.stringify(gltf)], { type: 'model/gltf+json' });\n \n return DOM.download(blob, keyword + '.gltf', 'Salva Modello GLTF');\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":1196,"value":"glbExport = {\n const data = atlas;//.concat(brain);\n const exporter = new THREE.GLTFExporter();\n const glb = await new Promise(resolve =>\n exporter.parse(data, resolve, {\n binary: true,\n truncateDrawRange: false\n })\n );\n const blob = new Blob([glb], { type: 'model/gltf-binary' });\n return DOM.download(blob, keyword + '.glb', 'Salva Modello GLB');\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":1102,"value":"","pinned":false,"hidden":false,"mode":"html","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"","database":"$undefined"},{"id":1112,"value":"{\n function set(input, value) {\n input.value = value;\n input.dispatchEvent(new Event(\"input\", {bubbles: true}));\n }\n \n const queryString = window.location.search;\n const urlParams = new URLSearchParams(queryString);\n const setAtlas = urlParams.get('setAtlas');\n if (setAtlas) {\n set(viewof selectAtlas, setAtlas.split('-'));\n\n const css = 'h1, p, form, label, button, input, output, select {display: none !important;} canvas { position: fixed; inset: 0 0 0 0; z-index: 10; } h2 { position: fixed; top: 10px; left: 10px; z-index: 11; }';\n const head = document.head || document.getElementsByTagName('head')[0];\n const style = document.createElement('style');\n\n head.appendChild(style);\n \n style.type = 'text/css';\n if (style.styleSheet){\n // This is required for IE8 and below.\n style.styleSheet.cssText = css;\n } else {\n style.appendChild(document.createTextNode(css));\n }\n }\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":654,"value":"options = {\n const toggleHelpers = checkboxes.includes(\"Mostra Box\");\n const toggleR = checkboxes.includes(\"Mostra Emisfero DX\");\n const toggleL = checkboxes.includes(\"Mostra Emisfero SX\");\n//const toggleAnimation = checkboxes.includes(\"Animation\");\n \n return {\n toggleR\n , toggleL\n , toggleHelpers\n//, toggleAnimation\n };\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":741,"value":"keyword = {\n let keyword = selectAtlas.length > 0 ? selectAtlas : ['brain']\n keyword = keyword.join(\"_\").replaceAll(\" \", \"-\").toLowerCase();\n console.log(keyword);\n return keyword;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":890,"value":"{\n requestAnimationFrame(() => renderer.render(scene, camera));\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":277,"value":"cube = {\n const material = new THREE.MeshNormalMaterial();\n const geometry = new THREE.BoxGeometry(10, 10, 10);\n const cube = new THREE.Mesh(geometry, material);\n \n cube.position.y = 0;\n cube.position.x = 100;\n cube.position.z = 100;\n \n return cube;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":688,"value":"spheres = {\n const table = atlasTable;\n const material = new THREE.MeshNormalMaterial();\n const mkSphere = (e) => {\n const { x, y, z } = e;\n const geometry = new THREE.SphereGeometry(1);\n geometry.translate(-45, -50 * 0, -45);\n const sphere = new THREE.Mesh(geometry, material);\n sphere.position.x = parseInt(x);\n sphere.position.y = parseInt(z);\n sphere.position.z = parseInt(y);\n return sphere;\n };\n const spheres = table.map(mkSphere);\n const group = new THREE.Group();\n\n spheres.map((e) => group.add(e));\n\n return group;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":692,"value":"{\n//scene.add(spheres);\n//scene.add(cube);\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":631,"value":"brainGeometry = {\n const vertices = mkVertices(brainModel);\n const geometry = mkGeometry(vertices);\n\n geometry.translate(-45, -50 * 0, -45);\n \n return geometry;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":512,"value":"brain = {\n const material = new THREE.MeshPhongMaterial({\n color: \"hsl(0,100%,100%)\",\n opacity: 0.3,\n transparent: true,\n depthWrite: false,\n side: THREE.DoubleSide\n });\n\n const mesh = new THREE.Mesh(brainGeometry, material);\n\n return mesh;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":639,"value":"helpBrain = {\n const help = new THREE.BoxHelper(brain);\n return help;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":619,"value":"atlasGeometries = {\n const geometry = new Array();\n \n for (const atlasModel of atlasModels) {\n const vertices = mkVertices(atlasModel);\n const _geometry = mkGeometry(vertices);\n _geometry.name = atlasModel.name;\n \n _geometry.translate(-45, -50 * 0, -45);\n geometry.push(_geometry);\n }\n \n return geometry;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":572,"value":"atlas = {\n const mesh = new Array();\n \n for (const atlasGeometry of atlasGeometries) {\n const material = new THREE.MeshPhongMaterial({\n color: atlasColor[atlasGeometry.name + \"_color\"],\n opacity: 0.3,\n transparent: true,\n depthWrite: false,\n side: THREE.DoubleSide\n });\n \n const _mesh = new THREE.Mesh(atlasGeometry, material);\n _mesh.rotation.y = brain.rotation.y;\n\n mesh.push(_mesh);\n }\n\n return mesh;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":650,"value":"helpAtlas = {\n const help = new Array();\n \n for (const i in atlas) {\n const _help = new THREE.BoxHelper(atlas[i]);\n help.push(_help);\n }\n \n return help;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":380,"value":"{\n scene.add(brain);\n for (const i in atlas) {\n scene.add(atlas[i]);\n }\n\n if (options.toggleHelpers) {\n scene.add(helpBrain);\n for (const i in helpAtlas) {\n scene.add(helpAtlas[i]);\n }\n }\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":420,"value":"{\n let color = 0xffffff;\n const intensity = 1;\n const light = new THREE.AmbientLight(color, intensity);\n scene.add(light);\n\n color = 0x00ff00;\n const light1 = new THREE.SpotLight(color);\n light1.position.y = 100;\n scene.add(light1);\n\n if (options.toggleHelpers) {\n const helper1 = new THREE.SpotLightHelper(light1);\n scene.add(helper1);\n }\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":440,"value":"{\n // GRID HELPER\n var size = 200;\n var divisions = 8;\n const helper = new THREE.GridHelper(size, divisions);\n // helper.position.y = -70;\n scene.add(helper);\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":249,"value":"scene = {\n atlasColor;\n checkboxes;\n selectAtlas;\n const scene = new THREE.Scene();\n scene.background = new THREE.Color(0x001b42);\n return scene;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":52,"value":"height = window.location.href.indexOf(\"setAtlas\") == -1 ? width/2 : window.innerHeight;","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":18,"value":"camera = {\n const fov = 45;\n const aspect = width / height;\n const near = 1;\n const far = 1000;\n const camera = new THREE.PerspectiveCamera(fov, aspect, near, far);\n \n camera.position.set(150, 200, -150);\n camera.lookAt(new THREE.Vector3(0, 0, 0));\n \n return camera;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":7,"value":"renderer = {\n const renderer = new THREE.WebGLRenderer({antialias: true});\n renderer.setSize(width, height);\n renderer.setPixelRatio(devicePixelRatio);\n \n const controls = new THREE.OrbitControls(camera, renderer.domElement);\n controls.addEventListener(\"change\", () => renderer.render(scene, camera));\n invalidation.then(() => (controls.dispose(), renderer.dispose()));\n \n return renderer;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":397,"value":"brainModel = mkBrainModel()","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":574,"value":"atlasModels = mkSelectAtlasModels()","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":371,"value":"mkGeometry = (vertices) => {\n const positions = [];\n const normals = [];\n const uvs = [];\n for (const vertex of vertices) {\n positions.push(...vertex.pos);\n normals.push(...vertex.norm);\n uvs.push(...vertex.uv);\n }\n\n const geometry = new THREE.BufferGeometry();\n const positionNumComponents = 3;\n const normalNumComponents = 3;\n const uvNumComponents = 2;\n const positionAttr = new THREE.BufferAttribute(\n new Float32Array(positions),\n positionNumComponents\n );\n const normalAttr = new THREE.BufferAttribute(\n new Float32Array(normals),\n normalNumComponents\n );\n const uvAttr = new THREE.BufferAttribute(\n new Float32Array(uvs),\n uvNumComponents\n );\n\n geometry.setAttribute(\"position\", positionAttr);\n geometry.setAttribute(\"normal\", normalAttr);\n geometry.setAttribute(\"uv\", uvAttr);\n\n return geometry;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":354,"value":"mkVertices = (meshModel) => {\n const { positions, cells } = meshModel;\n const norms = normals(cells, positions);\n\n const vertices = [];\n\n const uv3 = [\n [0, 0],\n [0, 1],\n [1, 0]\n ];\n\n let pos, norm, uv;\n for (const cell of cells) {\n // vertices.push(cell);\n for (let i = 0; i < 3; i++) {\n pos = positions[cell[i]];\n norm = norms[cell[i]];\n uv = uv3[i];\n vertices.push({ pos, norm, uv });\n }\n }\n\n return vertices;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":977,"value":"function getAtlasModels(atlasNames) {\n const atlasModels = new Array();\n const atlasNameSuffix = (options.toggleL ^ options.toggleR) ? (options.toggleL ? \" L\" : \" R\") : (options.toggleL ? \"\" : \"_\");\n\n for (const atlasName of atlasNames) {\n const atlas = atlasTable.filter((e) => e.name.startsWith(atlasName + atlasNameSuffix));\n const values = atlas.map(x => x.idx);\n \n for (const i in values) {\n const _cells = rawCellsAll.filter((e) => e.idx == values[i]);\n const _vertices = rawVerticesAll.filter((e) => e.idx == values[i]);\n \n const cells = _cells.map((e) => [\n parseInt(e.v2),\n parseInt(e.v1),\n parseInt(e.v0)\n ]);\n \n const positions = _vertices.map((e) => [\n parseFloat(e.z),\n parseFloat(e.x),\n parseFloat(e.y)\n ]);\n \n const colors = _cells.map((e) => [0.8, 0.2, 0.2, 0.5]);\n atlasModels.push({ cells, positions, colors, name: atlasName });\n }\n }\n \n return atlasModels;\n}\n","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":568,"value":"mkSelectAtlasModels = () => {\n let atlasModelsData = getAtlasModels(selectAtlas);\n return atlasModelsData;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":395,"value":"mkBrainModel = () => {\n const _cells = rawCells0;\n const _vertices = rawVertices0;\n\n const cells = _cells.map((e) => [\n parseInt(e.v2),\n parseInt(e.v1),\n parseInt(e.v0)\n ]);\n\n const positions = _vertices.map((e) => [\n parseFloat(e.z),\n parseFloat(e.x),\n parseFloat(e.y)\n ]);\n\n const colors = _cells.map((e) => [0.4, 0.4, 0.4, 0.5]);\n\n return { cells, positions, colors };\n\n return 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THREE;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":321,"value":"bunny = (await import(\"https://cdn.skypack.dev/bunny@1.0.1\")).default","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":546,"value":"atlasTable = await FileAttachment(\"atlas_table_selected-2@1.csv\").csv()","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","tool":"$undefined","providerMetadata":"$undefined","attachments":"$undefined","output":"$undefined","database":"$undefined"},{"id":548,"value":"rawCellsAll = await 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