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TCGA_expression_y = {
let queryJSON = {
format: 'json',
gene: ygenes,
page: 1,
page_size: 2000,
sort_by: 'tcga_participant_barcode'
}
if(selectby == 0){
queryJSON.cohort = cohortID
} else {
queryJSON.tcga_participant_barcode = samples
}
let hosturl = 'https://corsproxy.io/'
let endpointurl='http://firebrowse.org/api/v1/Samples/mRNASeq'
console.log(endpointurl +'?' + jq.param(queryJSON))
return (await fetch(hosturl +'?'+endpointurl +'?' + jq.param(queryJSON))).json()
}
TCGA_expression_y_noproxy = {
let queryJSON = {
format: 'json',
gene: ygenes,
page: 1,
page_size: 2000,
sort_by: 'tcga_participant_barcode'
}
if(selectby == 0){
queryJSON.cohort = cohortID
} else {
queryJSON.tcga_participant_barcode = samples
}
let endpointurl='http://firebrowse.org/api/v1/Samples/mRNASeq'
console.log(endpointurl +'?' + jq.param(queryJSON))
return (await fetch(endpointurl +'?' + jq.param(queryJSON))).json()
}
TCGA_expression_x = {
let queryJSON = {
format: 'json',
gene: xgenes,
page: 1,
page_size: 2000,
sort_by: 'tcga_participant_barcode'
}
if(selectby == 0){
queryJSON.cohort = cohortID
} else {
queryJSON.tcga_participant_barcode = samples
}
let hosturl = 'https://corsproxy.io/'
let endpointurl='http://firebrowse.org/api/v1/Samples/mRNASeq'
return (await fetch(hosturl +'?'+endpointurl +'?' + jq.param(queryJSON))).json()
}
TCGA_MAF = {
let queryJSON = {
format: 'json',
gene: xgenes,
page: 1,
page_size: 2000,
sort_by: 'tcga_participant_barcode'
}
if(selectby == 0){
queryJSON.cohort = cohortID
} else {
queryJSON.tcga_participant_barcode = samples
}
let hosturl = 'https://corsproxy.io/'
let endpointurl='http://firebrowse.org/api/v1/Analyses/Mutation/MAF'
return (await fetch(hosturl +'?'+endpointurl +'?' + jq.param(queryJSON))).json()
}
TCGA_Gistic = {
let queryJSON = {
format: 'json',
gene: xgenes,
page: 1,
page_size: 2000,
sort_by: 'tcga_participant_barcode'
}
if(selectby == 0){
queryJSON.cohort = cohortID
} else {
queryJSON.tcga_participant_barcode = samples
}
let hosturl = 'https://corsproxy.io/'
let endpointurl='http://firebrowse.org/api/v1/Analyses/CopyNumber/Genes/All'
return (await fetch(hosturl +'?'+endpointurl +'?' + jq.param(queryJSON))).json()
}
jq = require("https://code.jquery.com/jquery-3.4.1.js")
import {text} from "@jashkenas/inputs"
import {textarea} from "@jashkenas/inputs"
import {radio} from "@jashkenas/inputs"
Plotly = require("https://cdn.plot.ly/plotly-latest.min.js")
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