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Sergei Pond

http://lab.hyphy.org
sergeilkp@gmail.com

Public notebooks

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BUSTED-E error profiles
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Sergei Pond
Feb 9, 2024
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MoleRate (molecular relative evolutionary rates) analysis result visualization This notebook is a fork
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Sergei Pond
Feb 7, 2024
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Brute force string search algorithm
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Sergei Pond
Jan 31, 2024
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aBSREL analysis result visualization This notebook is a fork
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Sergei Pond
Dec 6, 2023
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Reservoir formation model testing
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Sergei Pond
Oct 23, 2023
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Network properties as a function of distance threshold
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Sergei Pond
Oct 17, 2023
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SARS-CoV-2 global genomic selection (2019-Aug 2023) This notebook is a fork
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Sergei Pond
Aug 13, 2023
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PRIME analysis result visualization This notebook is a fork
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Sergei Pond
Jun 9, 2023
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HIV-1 gag positional graph
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Sergei Pond
Mar 22, 2023
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RER test This notebook is a fork
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Sergei Pond
Mar 7, 2023
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SynREV Codon fit to all data This notebook is a fork
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Sergei Pond
Mar 3, 2023
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NRM (non-reversible model) analysis result visualization This notebook is a fork
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Sergei Pond
Mar 1, 2023
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Plotting MSS (amino-acid) GA model selection results This notebook is a fork
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Sergei Pond
Nov 21, 2022
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BUSTED-MH 4-taxon simulation results
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Sergei Pond
Nov 19, 2022•1
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Alignment screens with aBSREL This notebook is a fork
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Sergei Pond
Oct 11, 2022
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Evaluate different forms of multiple testing correction. This notebook is a fork
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Sergei Pond
Sep 21, 2022
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BUSTED[S] vs BUSTED[S]-MH This notebook is a fork
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Sergei Pond
Nov 30, 2022
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Plot asymptotic vs empirical LRT distribution
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Sergei Pond
Sep 12, 2022•2
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ARGOS API/organism
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Sergei Pond
Aug 10, 2022
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MEME analysis result visualization This notebook is a fork
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Sergei Pond
Jul 15, 2022•1
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Plotting MSS codon-level model results
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Sergei Pond
Jul 12, 2022•1
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Visualizing MSS model results
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Sergei Pond
Jun 13, 2022
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Compare BUSTED analysis results This notebook is a fork
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Sergei Pond
May 27, 2022
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BUSTED analysis result visualization This notebook is a fork
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Sergei Pond
Dec 1, 2022
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Discrete distribution visualization This notebook is a fork
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Sergei Pond
May 12, 2022•1
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Visualizing selection analysis results for evolution of WNV
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Sergei Pond
May 2, 2022•1
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Search + Table This notebook is a fork
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Sergei Pond
Apr 25, 2022
BUSTED[S] vs BUSTED[S]-MH This notebook is a fork
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Sergei Pond
Apr 25, 2022
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Evidence of natural selection history operating on SARS-CoV-2 genomes enabled by… This notebook is a fork
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Sergei Pond
Apr 5, 2022
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Phylotree 1.0.0 -- Unscaled IAV HA colored by host This notebook is a fork
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Sergei Pond
Apr 5, 2022
Showing 1-30 of 170 notebooks
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