Sergei Pond

•lab.hyphy.org

42

Published

24

Likes

9

Forks

Sergei Pond

•lab.hyphy.org

42

Published

24

Likes

9

Forks

Notebooks Collections

Notebooks

Showing 1-30 of 42 notebooks

Visualizing selection analysis results for CoV evolution in bats

Jun 24

Distribution of SARS-CoV-2 sequences that have a particular mutational signature

Jun 18

Mutation arrivals in SARS-CoV-2 genomes

Jun 9

Genomic divergence of SARS-CoV-2 over time

Jun 9

Testing recombination in the pandemic SARS-CoV-2 strains

May 28• 1

May 26• 1

Summary of SARS-CoV-2 genomic diversity

May 12

Internal FEL on SARS-CoV-2 data

May 6

SRRs with many mid-range variants (multiple infections)?

Apr 18

CpG deficiency in beta-coronaviruses

Apr 16

Apr 5

COVID table export

Mar 26

Natural selection analysis of SARS-CoV-2/COVID-19 enabled by data from

Mar 24• 10

Genomic diversity and divergence of SARS-CoV-2/COVID-19

Mar 23• 3

Multihit paper empirical results

Mar 10

Multihit paper empirical results for substitutions

Mar 9

Example alignments for multihit paper

Feb 5

Multi-hit simulations

Feb 5• 1

Plotting MEME EBF on branches at individual sites

Jan 20

Multi-hit simulations

Dec 13, 2019• 1

Research and funding summary

Nov 19, 2019

Clustering faculty applications

Nov 18, 2019

Figure 1 mtDNA paper

Oct 3, 2019

Figure 1 mtDNA paper

Oct 1, 2019

Aug 29, 2019• 2

HIV transmission network analysis

Aug 13, 2019

PAML-style analyses summary

Jul 3, 2019

K-means clustering algorithm

Jun 12, 2019• 1

Two sample t-test

Jun 11, 2019

Jun 11, 2019• 1

Showing 1-30 of 42 notebooks