The avatar for @stevenweaver
Steven Weaver
Published
Edited
Sep 3, 2020
Fork of Summary of SARS-CoV-2 genomic diversity
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/*ag_omega_vs_freq = vegalite({
"title": null,
data: {values: codons_by_counts},
"encoding": {
//"size" : {"value" : 100},
"x": {
field: "AF",
"title" : "Variant Frequency",
type: "ordinal",
"scale" : {"type": "ordinal", "domain" : ["1","2","3","4","5","6","7","8","9","10","11-20","21-100","101-3000",">3000"]}
},

"y": {"field": "count", "type": "quantitative",
"stack": "normalize",
axis: {
"title" : "fraction",
axis: null,
"grid" : false,
},
"scale": {
"type": "linear",
}},
"color" : {
"legend" : null,
"field" : "codon" ,
"type": "nominal",
"scale":{"scheme": "category20c"}
},
},
layer: [{
width : 400,
height: 1400,

"mark": {
"type": "bar",
"filled" : false,
clip : true,
tooltip: true,
},
},
{
"mark": {
"type": "text",
"align": "center",
"baseline": "top",
//"dx": 10,
},
"encoding": {
"text": {"field": "codon", "type": "nominal"}
}}]

})*/
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ext=d3.extent (_.map (_.filter (sr_plot_2, (d)=>d.gene == "S" && d.type == "Unique haplotypes"), (d)=>d.value))
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