Steven Weaver’s notebooks | Observable

Notebooks

Filter

Sort

Thumbnail

Thumbnail

Thumbnail

Thumbnail

Thumbnail

Thumbnail

Thumbnail

Thumbnail

Thumbnail

Thumbnail

Filter

Sort

Steven Weaver’s notebooks | Observable

Thumbnail

Displaying Phylogenetic Trees with Phylotree.js

Aug 19, 2018

4

Thumbnail

Computing Root-to-Tip Distances with Phylotree.js

May 24, 2021

Thumbnail

Identifying Clusters in a Phylogenetic Tree with Phylotree.js

May 24, 2021

Thumbnail

Identifying Clusters in a Phylogenetic Tree with Phylotree.js Part II

May 24, 2021

3

Thumbnail

Computing the Center of the Tree with Phylotree.js

May 24, 2021

Thumbnail

Simple Histogram counting SNPs across CHR22

May 26, 2021

Thumbnail

Identifying Clusters in a Phylogenetic Tree with Phylotree.js

Jan 9, 2019

Thumbnail

Phylotree 1.0.0

Jan 30, 2025

2

6

Thumbnail

Computing Root-to-Tip Distances with Phylotree.js

Mar 13, 2019

Thumbnail

Identifying Clusters in a Phylogenetic Tree with Phylotree.js Part II

Jan 15, 2019

Thumbnail

Fitch's Algorithm

Apr 19, 2020

1

Thumbnail

May 9, 2019

Thumbnail

Sep 9, 2019

Thumbnail

Datamonkey and SARS-CoV-2 related analyses

Aug 2, 2021

Thumbnail

Natural selection analysis of SARS-CoV-2/COVID-19

Apr 16, 2020

Thumbnail

Natural selection analysis of SARS-CoV-2/COVID-19

Apr 29, 2020

Thumbnail

Apr 20, 2020

Thumbnail

Natural selection analysis of SARS-CoV-2/COVID-19 - Galaxy Edition

Apr 28, 2020

Thumbnail

Natural selection analysis of SARS-CoV-2/COVID-19 enabled by data from

Jan 12, 2021

Thumbnail

Genomic diversity and divergence of SARS-CoV-2/COVID-19

May 18, 2020

Thumbnail

Jul 15, 2020

4

Thumbnail

HyPhy Benchmarks and Profiling

Aug 24, 2020

Thumbnail

Summary of SARS-CoV-2 genomic diversity

Sep 3, 2020

Thumbnail

MEME p-values vs number of variants by site

Sep 24, 2020

Thumbnail

Tracking signature mutations in SARS-CoV-2 relative to the inferred progenitor strain

Oct 29, 2020

1

Thumbnail

Displaying aBSREL results using branch "censoring"

Jan 5, 2021

Thumbnail

Tracking signature mutations in SARS-CoV-2 relative to the inferred progenitor strain

Jan 15, 2021

Thumbnail

MULTI-HIT analysis result visualization

Mar 11, 2021

Thumbnail

Phylotree 1.0.0 -- HIV RT

May 24, 2021

Thumbnail

NGS Copy Diversity with Phylotree 1.0.0

May 26, 2021

Thumbnail

Phylotree 1.0.0 -- Unscaled IAV HA colored by host

Jan 26, 2023

2

Thumbnail

Internal Node Labels with Phylotree

Nov 30, 2021

Thumbnail

PANGOLIN Clade Counts

Sep 1, 2021

Thumbnail

Sep 28, 2022

Thumbnail

Oct 25, 2022

Thumbnail

SARS-CoV-2 Coordinate Map

Oct 28, 2022

Thumbnail

Phylotree 1.0.0 with Thick Branches

Jan 26, 2023

Thumbnail

AWS Gantt Chart

Aug 3, 2022

Thumbnail

MeV Gantt Chart

Jul 31, 2023

Thumbnail

Phylotree 1.0.0 -- Unscaled IAV HA colored by host

Aug 9, 2023

Steven Weaver

@stevenweaver

56

1

0