Published
Edited
Sep 20, 2019
md`Below is code from last semester that I want to move over to Javascript.`
PAAD_expression_x = {
let queryJSON = {
format: 'json',
gene: xgene,
cohort: 'PAAD',
page: 1,
page_size: 183,
sort_by: 'tcga_participant_barcode'
}
let hosturl = 'https://firebrowse.herokuapp.com'
let endpointurl = 'http://firebrowse.org/api/v1/Samples/mRNASeq'
return (await fetch(hosturl + '?' + endpointurl + '?' +
jq.param(queryJSON))).json()
}
PAAD_expression_y = {
let queryJSON = {
format: 'json',
gene: ygene,
cohort: 'PAAD',
page: 1,
page_size: 183,
sort_by: 'tcga_participant_barcode'
}
let hosturl = 'https://firebrowse.herokuapp.com'
let endpointurl='http://firebrowse.org/api/v1/Samples/mRNASeq'
return (await fetch(hosturl +'?'+endpointurl +'?' + jq.param(queryJSON))).json()
}
jq = require("https://code.jquery.com/jquery-3.4.1.js")
viewof xgene = select({
options: ['GATA6','KRAS','TFF1'],
value: 'KRAS'
})
viewof ygene = select({
options: ['GATA6','KRAS','TFF1'],
value: 'GATA6'
})
import {select} from "@jashkenas/inputs"
{
let plotData = {
x: [],
y: [],
text: [],
mode: 'markers',
type: 'scatter'
};
PAAD_expression_x.mRNASeq.forEach(
function(ob) {
plotData.x.push(ob.expression_log2)
plotData.text.push(ob.tcga_participant_barcode)
}
);
PAAD_expression_y.mRNASeq.forEach(
function(ob) {
plotData.y.push(ob.expression_log2)
}
);
const div = DOM.element('div')
Plotly.newPlot(div, [plotData]);
return div
}
Plotly = require("https://cdn.plot.ly/plotly-latest.min.js")
One platform to build and deploy the best data apps
Experiment and prototype by building visualizations in live JavaScript notebooks. Collaborate with your team and decide which concepts to build out.
Use Observable Framework to build data apps locally. Use data loaders to build in any language or library, including Python, SQL, and R.
Seamlessly deploy to Observable. Test before you ship, use automatic deploy-on-commit, and ensure your projects are always up-to-date.