NCI/DCEG Chief Data Scientist
Public
Edited
Nov 18, 2022
1 star
txt = pgs.textArea(id)
pgsAttr = pgs.get(`score/${id}?format=json`) // pgs.info
rsid = pgs.getRsid([1, 100880328, "T", "A"])
md`## Methods`
md`## Genomics services sandbox`
(await fetch(
'https://api.genome.ucsc.edu/getData/track?genome=hg19;track=knownGene;chrom=chr1;start=100781169;end=100781170'
)).json()
snp138 = (await fetch(
'https://api.genome.ucsc.edu/getData/track?genome=hg19;track=snp138;chrom=chr1;start=100781168;end=100781169'
)).json()
snp138.snp138[0].name
(await fetch(
'https://myvariant.info/v1/variant/chr1:g.100781169T>C?assembly=hg19'
)).json()
md`### with the right assembly`
(await fetch(
'https://myvariant.info/v1/variant/chr1:g.100781169T>C?assembly=hg19&fields=dbsnp.rsid'
)).json()
md`### finding the right assembly`
(await fetch(
'https://myvariant.info/v1/variant/chr1:g.100781169T>C?fields=dbsnp.rsid'
)).json()
(await fetch(
'https://myvariant.info/v1/variant/chr7:g.91459189ATT>A?fields=dbsnp.rsid'
)).json()
pgs.textArea(4)
(await pgs.loadScore(4)).replaceAll('\t',' ','g')
(
await fetch(
"https://proxy.jalmeida.workers.dev/?https://api.ncbi.nlm.nih.gov/variation/v0/spdi/NC_000001.10:235612031:G:A/rsids"
)
).json()
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