2a:null 2b:["$","title",null,{"children":"Exploring biosound data | Exploration workspace | Observable"}] 30:[{"id":"fbfe45119ea21f21e5b373b12cdd06e5f4a53bb39ec4e100d665e2fc43baa9f45995bae86cbbe5c0c645a4fc63bbc4e58398840fa9182ffb78280a4ea0204894","href":"https://static.observableusercontent.com/files/fbfe45119ea21f21e5b373b12cdd06e5f4a53bb39ec4e100d665e2fc43baa9f45995bae86cbbe5c0c645a4fc63bbc4e58398840fa9182ffb78280a4ea0204894","name":"fish_mayriver@2.csv","type":"text/csv","lastModified":1739902201660.869,"size":606795},{"id":"cd50c688264b54cd09f41989131e3431b67bb77e046744bbf2b5c6d04bbe7b29eb259574ff05b9eff4fdc120201ee4de3e8271a6c410b2e4894b3a2a846b1a5f","href":"https://static.observableusercontent.com/files/cd50c688264b54cd09f41989131e3431b67bb77e046744bbf2b5c6d04bbe7b29eb259574ff05b9eff4fdc120201ee4de3e8271a6c410b2e4894b3a2a846b1a5f","name":"fish_keywest@2.csv","type":"text/csv","lastModified":1739902201971.942,"size":4507425},{"id":"406c6436badfb30e8a039c37f8f4c721da2049daf4994d99f12988e8eb165d7add6defab9ff30ccfa498760499dfcb4f004aee8760c9266c32af92c8fd470fa5","href":"https://static.observableusercontent.com/files/406c6436badfb30e8a039c37f8f4c721da2049daf4994d99f12988e8eb165d7add6defab9ff30ccfa498760499dfcb4f004aee8760c9266c32af92c8fd470fa5","name":"fish_mayriver@3.csv","type":"text/csv","lastModified":1739902936189.762,"size":440386},{"id":"398ec29c2e835f4cef9d750d9b0f6fd0dbe3993ad62cd31c1ab7fe8eabdf7203fde22ee59f801eec6d924c1c921407e282b8a0c0096b7121f29d0a9cd2431e83","href":"https://static.observableusercontent.com/files/398ec29c2e835f4cef9d750d9b0f6fd0dbe3993ad62cd31c1ab7fe8eabdf7203fde22ee59f801eec6d924c1c921407e282b8a0c0096b7121f29d0a9cd2431e83","name":"fish_keywest@3.csv","type":"text/csv","lastModified":1739902936840.361,"size":4506394},{"id":"0ec61a14c8da7ba52533e7cbd95c977b125cd73d9a0e097573abe4a595b00dd4293dab5f9bcc4b7984354fd056f812413c76065cf6e4810be071a32489bd9bc9","href":"https://static.observableusercontent.com/files/0ec61a14c8da7ba52533e7cbd95c977b125cd73d9a0e097573abe4a595b00dd4293dab5f9bcc4b7984354fd056f812413c76065cf6e4810be071a32489bd9bc9","name":"index_data@2.csv","type":"text/csv","lastModified":1739764483686.612,"size":24314409},{"id":"6160253ea6a850166bb3a2661a3d38a4609ac0213e0ca1decd25ad766e8439a16b484bb57018ef8644b8c1781daa3d559316668a7154b4c32e64deb4f17c1dd4","href":"https://static.observableusercontent.com/files/6160253ea6a850166bb3a2661a3d38a4609ac0213e0ca1decd25ad766e8439a16b484bb57018ef8644b8c1781daa3d559316668a7154b4c32e64deb4f17c1dd4","name":"index_data_for_kmeans_pca@1.csv","type":"text/csv","lastModified":1739831940345.376,"size":3722186}] 2e:{"id":"e0d3fd79dd5e337b","slug":"exploring-biosound-data","title":"Exploring biosound data","thumbnail":"4b7163dac09e0f9429d1003b6ee30b9fa276c5fd5536e789561f252968902661","access_level":"unlisted","create_time":"$D2025-02-17T02:54:03.597Z","update_time":"$D2025-02-19T02:16:55.958Z","view_time":null,"first_public_time":null,"has_unpublished_edits":null,"fork":false,"stars":0,"starred":false,"owner":{"type":"team","id":"e97bb3b08e68f1ee","login":"michw-workspace","name":"Exploration workspace","avatar_url":"https://avatars-next.observableusercontent.com/9b0b285e85a376954c3171423a49a6096dbd4f9dd0d4597d14f12284b327053d","tier":"starter_2024"},"version":400,"publish_version":null,"role":null,"authored":false,"authors":[{"type":"individual","id":"96dd0b2c7f0e0455","login":"michelle-weirathmueller","name":"Michelle Weirathmueller","avatar_url":"https://avatars-next.observableusercontent.com/29df8d1d0d1dd5a6c315193b2538d2d9a27372b576659bc5f845b6df46b4042b","tier":null}],"members":[{"type":"individual","id":"96dd0b2c7f0e0455","login":"michelle-weirathmueller","name":"Michelle Weirathmueller","avatar_url":"https://avatars-next.observableusercontent.com/29df8d1d0d1dd5a6c315193b2538d2d9a27372b576659bc5f845b6df46b4042b","tier":null,"role":"editor"},{"type":"team","id":"e97bb3b08e68f1ee","login":"michw-workspace","name":"Exploration workspace","avatar_url":"https://avatars-next.observableusercontent.com/9b0b285e85a376954c3171423a49a6096dbd4f9dd0d4597d14f12284b327053d","tier":"starter_2024","role":"editor"}],"comments":[],"custom_thumbnail":true,"trashed":false,"lapsed":null,"subscribed":null,"forks":0,"collection":null,"type":"notebook","body":{"titling":"auto","title":"Exploring biosound data","cells":[{"id":0,"value":"# Exploring biosound data","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":139,"value":"## PCA Analysis colored by dataset/location\n","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":148,"value":"html`\n

${kmeans_plot_clusters}

${kmeans_plot_datasets}

\n\n`","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":216,"value":"html`\n

${viewof clusters_multiple}

${viewof locs_multiple}

\n`","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":285,"value":"
\n
\n

","pinned":false,"hidden":false,"mode":"html","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":142,"value":"## Correlations between different indices colored by dataset","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":11,"value":"Plot.plot({\n color: {\n legend: true,\n domain: [\"Biscayne Bay, FL\", \"Chukchi Sea, Hanna Shoal\", \"Gray's Reef, GA\", \n \"Key West, FL\", \"May River, SC\", \"ONC-MEF\", \"OOI-HYDBBA106\", \"Olowalu (Maui, HI)\"],\n range: [\"#4e79a7\", \"#f28e2c\", \"#e15759\", \"#76b7b2\", \"#59a14f\", \n \"#edc949\", \"#af7aa1\", \"#ff9da7\"] // Custom colors\n },\n marks: [\n // Background (non-selected) data points\n Plot.dot(index_data.filter(d => d.Dataset !== selectedDataset), {\n x: idx1, \n y: idx2,\n fill: \"gray\",\n fillOpacity: 0.1\n }),\n // Selected dataset on top\n Plot.dot(index_data.filter(d => d.Dataset === selectedDataset), {\n x: idx1, \n y: idx2,\n fill: \"Dataset\",\n fillOpacity: 1\n })\n ]\n})","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":57,"value":"viewof selectedDataset = Inputs.select(\n [...new Set(index_data.map(d => d.Dataset))], // Get unique dataset values\n {label: \"Select Dataset\"}\n)","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":15,"value":"viewof idx1 = Inputs.select(indices, {label: \"Select index 1\"})","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":65,"value":"viewof idx2 = Inputs.select(indices, {label: \"Select index 2\"})","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":295,"value":"
\n
\n

","pinned":false,"hidden":false,"mode":"html","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":88,"value":"# Appendix","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":30,"value":"index_data = FileAttachment(\"index_data@2.csv\").csv({typed: true})","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":101,"value":"kmeans = FileAttachment(\"index_data_for_kmeans_pca@1.csv\").csv({typed: true})","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":20,"value":"indices = [\"ACI\", \"ZCR\", \"BGNt\", \"EVNtCount\", \"Ht\", \"ADI\", \"BI\", \"Hf\", \"NDSI\", \"MEANf\", \"SNRf\"]","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":47,"value":"locs = [...new Set(index_data.map(d => d.Dataset))]","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":177,"value":"clusters = [...new Set(kmeans.map(d => d.Cluster))]","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":184,"value":"clusters","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":186,"value":"locs\n","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":249,"value":"## K-means summary plots\nThese are the plots and the selection boxes for the top section (they're showing as detached bc they're plotted above in html blocks).","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":196,"value":"viewof clusters_multiple = Inputs.select(clusters, {label: \"Cluster multiselect\", multiple: true})","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":111,"value":"viewof locs_multiple = Inputs.select(locs, {label: \"Locations multiselect\", multiple: true})","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":151,"value":"kmeans_plot_clusters = Plot.plot({\n title: \"Clusters\",\n color: {\n legend: true,\n domain: clusters,\n range: [\"#4e79a7\", \"#f28e2c\", \"#e15759\", \"#76b7b2\", \"#59a14f\", \n \"#edc949\", \"#af7aa1\", \"#ff9da7\"] // Custom colors\n },\n marks: [\n // Background (non-selected) data points\n Plot.dot(kmeans.filter(d => !clusters_multiple.some(num => num === d.Cluster)), {\n x: \"PC1\", \n y: \"PC2\",\n fillOpacity: 0.1,\n fill: \"gray\"\n }),\n // Selected datasets on top\n Plot.dot(kmeans.filter(d => clusters_multiple.some(num => num === d.Cluster)), {\n x: \"PC1\", \n y: \"PC2\",\n fill: \"Cluster\",\n fillOpacity: 1\n })\n ],\n layout: {\n marginRight: 120\n }\n})","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":105,"value":"kmeans_plot_datasets = Plot.plot({\n title: \"Locations/Datasets\",\n color: {\n legend: true,\n domain: locs,\n range: [\"#4e79a7\", \"#f28e2c\", \"#e15759\", \"#76b7b2\", \"#59a14f\", \n \"#edc949\", \"#af7aa1\", \"#ff9da7\"] // Custom colors\n },\n marks: [\n // Background (non-selected) data points\n Plot.dot(kmeans.filter(d => !locs_multiple.includes(d.Dataset)), {\n x: \"PC1\", \n y: \"PC2\",\n fillOpacity: 0.1,\n fill: \"gray\"\n }),\n // Selected datasets on top\n Plot.dot(kmeans.filter(d => locs_multiple.includes(d.Dataset)), {\n x: \"PC1\", \n y: \"PC2\",\n fill: \"Dataset\",\n fillOpacity: 1\n })\n ],\n layout: {\n marginRight: 120\n }\n})","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":329,"value":"## Annotations","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":326,"value":"### Annotation stats calcs","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":337,"value":"indices_ann_means = ['ACI_mean','ZCR_mean', 'BGNt_mean', 'EVNtCount_mean', 'Ht_mean', 'ADI_mean', 'BI_mean', 'Hf_mean', 'NDSI_mean', 'MEANf_mean', 'SNRf_mean']","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":309,"value":"### May River Annotations","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":303,"value":"may_river_anno = FileAttachment(\"fish_mayriver@3.csv\").csv({typed: true})","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":305,"value":"viewof table = Inputs.table(may_river_anno)","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":311,"value":"### Key West Annotations","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"","database":"$undefined"},{"id":301,"value":"key_west_anno = FileAttachment(\"fish_keywest@3.csv\").csv({typed: true})","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"},{"id":307,"value":"viewof table1 = Inputs.table(key_west_anno)","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","providerMetadata":"$undefined","output":"$undefined","database":"$undefined"}],"files":"$W30","stdlib":"1"}} 2f:"$2e:body"