The avatar for @pkerpedjiev
Peter Kerpedjiev
Published
Edited
Jul 23, 2019
Importers
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md`# IGV BAM File Reader`
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alignments = br.readAlignments('Chromosome', 0, 1)
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md`BamUtils and BamReader are taken from the [igv.js source code](https://github.com/igvteam/igv.js/blob/master/js/bam/bamReader.js)`
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numberFormatter = function (rawNumber) {

var dec = String(rawNumber).split(/[.,]/),
sep = ',',
decsep = '.';

return dec[0].split('').reverse().reduce(function (prev, now, i) {
return i % 3 === 0 ? prev + sep + now : prev + now;
}).split('').reverse().join('') + (dec[1] ? decsep + dec[1] : '');
}
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loadBamFile = function(fileUrl) {
const br = new BamReader({
url: fileUrl}, null);
return br;
}
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