All notebooks regarding the taxonomic analysis of metatranscriptomics data

Metatranscriptomic pipelines

Metatranscriptomic pipelines (full data)

Metabarcoding Data Analysis

Percentage comparison (fungi)

Percentage comparison (bacteria)

taxonomic-analysis

high-precision-swissprot-v1.json

high-sensitivity-swissprot-v1.json

tryptic-precision-swissprot-v1.json

tryptic-precision-full-index-v1.json

tryptic-sensitivity-swissprot-v1.json

max-precision-swissprot-v1.json

max-sensitivity-swissprot-v1.json

tryptic-sensitivity-full-index-v1.json

max-sensitivity-full-index-v1.json

high-sensitivity-full-index-v1.json

high-precision-full-index-v1.json

max-precision-full-index-v1.json

high-sensitivity-swissprot-freq-v1.json

tryptic-precision-swissprot-freq-v1.json

max-precision-full-index-freq-v1.json

max-precision-swissprot-freq-v1.json

tryptic-sensitivity-full-index-freq-v1.json

tryptic-sensitivity-swissprot-freq-v1.json

high-precision-full-index-freq-v1.json

high-precision-swissprot-freq-v1.json

tryptic-precision-full-index-freq-v1.json

high-sensitivity-full-index-freq-v1.json

max-sensitivity-swissprot-freq-v1.json

max-sensitivity-full-index-freq-v1.json

tryptic-precision-swissprot-unipept-v1.json

tryptic-precision-full-index-unipept-v1.json

tryptic-sensitivity-swissprot-unipept-v1.json

max-precision-swissprot-unipept-v1.json

high-precision-swissprot-unipept-v1.json

high-sensitivity-swissprot-unipept-v1.json

max-precision-full-index-unipept-v1.json

max-sensitivity-swissprot-unipept-v1.json

tryptic-sensitivity-full-index-unipept-v1.json

high-precision-full-index-unipept-v1.json

high-sensitivity-full-index-unipept-v1.json

max-sensitivity-full-index-unipept-v1.json

tryptic-precision-swissprot-species-v1.json

tryptic-precision-full-index-species-v1.json

tryptic-sensitivity-swissprot-species-v1.json

max-precision-swissprot-species-v1.json

high-precision-swissprot-species-v1.json

max-sensitivity-swissprot-species-v1.json

high-sensitivity-swissprot-species-v1.json

max-precision-full-index-species-v1.json

tryptic-sensitivity-full-index-species-v1.json

high-precision-full-index-species-v1.json

high-sensitivity-full-index-species-v1.json

max-sensitivity-full-index-species-v1.json

tryptic-precision-full-index-freq-v1@2.json

tryptic-precision-full-index-v1@2.json

tryptic-sensitivity-full-index-v1@1.json

tryptic-sensitivity-full-index-freq-v1@1.json