The avatar for @zanarmstrong
Zan
Data Visualization for Data Analysis
Public
Edited
Jan 24, 2023
Paused
Insert cell
Insert cell
Insert cell
Insert cell
Insert cell
Insert cell
Insert cell
Insert cell
Insert cell
totalwidth = Math.min(Math.max(width, 400), 1200)
Insert cell
totalheight = Math.min(Math.max(totalwidth / 2, 300), 400)
Insert cell
Insert cell
Insert cell
Insert cell
xlabel = "Date of Sample"
Insert cell
ylabel = "Quantity of RNA, normalized"
Insert cell
Insert cell
timeframes = ({'Last 4 weeks': 4,
'Last 6 weeks': 6,
'Last 12 weeks': 12,
'Since Dec 3, 2021 (start of tracking Omicron)': weeksSince("2021-12-03"),
'Since July 29, 2021 (beginning of tracking)': weeksSince("2021-07-29")
})
Insert cell
weeksSince = function(datestring){
return (d3.timeDay.count(d3.timeParse("%Y-%m-%d")(datestring), new Date()) - 1) / 7
}
Insert cell
mainTitle = "SARS-CoV-2 genes (N, S), and variant-specific (ie. BA.4+BA.5 Omicron)"
Insert cell
metricsAvailable = ["N_PMMoV","S_PMMoV","Del_143145_PMMoV", "BA_2_LPPA24S_PMMoV", "BA_4_ORF1a_Del_141143_PMMoV","HV_6970_Del_PMMoV", "BA_2_75_S_147E_S_152R_PMMoV", "XBB_bkpt_PMMoV", ]

Insert cell
codigaOnly = rawdata.filter(d => d.Plant == "CODIGA")
Insert cell
[...new Set(rawdata.map(d => d.Plant))]
Insert cell
rawdata
Insert cell
import {d3, plotOverview, credit, rawdata, metricsMeta} with {xlabel, ylabel, totalheight, totalwidth, num_weeks, mainTitle, metrics} from "6c55536820c54786"
Insert cell
Insert cell

Purpose-built for displays of data

Observable is your go-to platform for exploring data and creating expressive data visualizations. Use reactive JavaScript notebooks for prototyping and a collaborative canvas for visual data exploration and dashboard creation.
Learn more