// from https://observablehq.com/@d3/force-directed-graph/2
chart = {
// Specify the dimensions of the chart.
const width = 928;
const height = 600;
// Specify the color scale.
const color = d3.scaleOrdinal(d3.schemeCategory10);
// The force simulation mutates links and nodes, so create a copy
// so that re-evaluating this cell produces the same result.
const links = data.links.map(d => ({...d}));
const nodes = data.nodes.map(d => ({...d}));
// Create a simulation with several forces.
const simulation = d3.forceSimulation(nodes)
.force("link", d3.forceLink(links).id(d => d.id))
.force("charge", d3.forceManyBody())
.force("center", d3.forceCenter(width / 2, height / 2))
.on("tick", ticked);
// Create the SVG container.
const svg = d3.create("svg")
.attr("width", width)
.attr("height", height)
.attr("viewBox", [0, 0, width, height])
.attr("style", "max-width: 100%; height: auto;");
// Add a line for each link, and a circle for each node.
const link = svg.append("g")
.attr("stroke", "#999")
.attr("stroke-opacity", 0.6)
.selectAll()
.data(links)
.join("line")
.attr("stroke-width", d => Math.sqrt(d.value));
const node = svg.append("g")
.attr("stroke", "#fff")
.attr("stroke-width", 1.5)
.selectAll()
.data(nodes)
.join("circle")
.attr("r", 5)
.attr("fill", d => color(d.group));
node.append("title")
.text(d => d.id);
// Add a drag behavior.
node.call(d3.drag()
.on("start", dragstarted)
.on("drag", dragged)
.on("end", dragended));
// Set the position attributes of links and nodes each time the simulation ticks.
function ticked() {
link
.attr("x1", d => d.source.x)
.attr("y1", d => d.source.y)
.attr("x2", d => d.target.x)
.attr("y2", d => d.target.y);
node
.attr("cx", d => d.x)
.attr("cy", d => d.y);
}
// Reheat the simulation when drag starts, and fix the subject position.
function dragstarted(event) {
if (!event.active) simulation.alphaTarget(0.3).restart();
event.subject.fx = event.subject.x;
event.subject.fy = event.subject.y;
}
// Update the subject (dragged node) position during drag.
function dragged(event) {
event.subject.fx = event.x;
event.subject.fy = event.y;
}
// Restore the target alpha so the simulation cools after dragging ends.
// Unfix the subject position now that it’s no longer being dragged.
function dragended(event) {
if (!event.active) simulation.alphaTarget(0);
event.subject.fx = null;
event.subject.fy = null;
}
// When this cell is re-run, stop the previous simulation. (This doesn’t
// really matter since the target alpha is zero and the simulation will
// stop naturally, but it’s a good practice.)
invalidation.then(() => simulation.stop());
return svg.node();
}
data2 = FileAttachment("miserables.json").json()
db = FileAttachment("endorser-ch-test-local.sqlite3").sqlite()
dataTable= db.query(`SELECT subject, object FROM network`)
nodesSub = dataTable.map(row => ({id: row.subject, group: 1}))
nodesObj = dataTable.map(row => ({id: row.object, group: 1}))
nodes = R.uniq([...nodesSub, ...nodesObj])
links = dataTable.map(row => ({source: row.subject, target: row.object, value: 1}))
data = ({ nodes: nodes, links: links })
R = require("ramda")
// Copyright 2021-2024 Observable, Inc.
// Released under the ISC license.
// https://observablehq.com/@d3/force-directed-graph
function ForceGraph({
nodes, // an iterable of node objects (typically [{id}, …])
links // an iterable of link objects (typically [{source, target}, …])
}, {
nodeId = d => d.id, // given d in nodes, returns a unique identifier (string)
nodeGroup, // given d in nodes, returns an (ordinal) value for color
nodeGroups, // an array of ordinal values representing the node groups
nodeTitle, // given d in nodes, a title string
nodeFill = "currentColor", // node stroke fill (if not using a group color encoding)
nodeStroke = "#fff", // node stroke color
nodeStrokeWidth = 1.5, // node stroke width, in pixels
nodeStrokeOpacity = 1, // node stroke opacity
nodeRadius = 5, // node radius, in pixels
nodeStrength,
linkSource = ({source}) => source, // given d in links, returns a node identifier string
linkTarget = ({target}) => target, // given d in links, returns a node identifier string
linkStroke = "#999", // link stroke color
linkStrokeOpacity = 0.6, // link stroke opacity
linkStrokeWidth = 1.5, // given d in links, returns a stroke width in pixels
linkStrokeLinecap = "round", // link stroke linecap
linkStrength,
colors = d3.schemeTableau10, // an array of color strings, for the node groups
width = 640, // outer width, in pixels
height = 400, // outer height, in pixels
invalidation // when this promise resolves, stop the simulation
} = {}) {
// Compute values.
const N = d3.map(nodes, nodeId).map(intern);
const R = typeof nodeRadius !== "function" ? null : d3.map(nodes, nodeRadius);
const LS = d3.map(links, linkSource).map(intern);
const LT = d3.map(links, linkTarget).map(intern);
if (nodeTitle === undefined) nodeTitle = (_, i) => N[i];
const T = nodeTitle == null ? null : d3.map(nodes, nodeTitle);
const G = nodeGroup == null ? null : d3.map(nodes, nodeGroup).map(intern);
const W = typeof linkStrokeWidth !== "function" ? null : d3.map(links, linkStrokeWidth);
const L = typeof linkStroke !== "function" ? null : d3.map(links, linkStroke);
// Replace the input nodes and links with mutable objects for the simulation.
nodes = d3.map(nodes, (_, i) => ({id: N[i]}));
links = d3.map(links, (_, i) => ({source: LS[i], target: LT[i]}));
// Compute default domains.
if (G && nodeGroups === undefined) nodeGroups = d3.sort(G);
// Construct the scales.
const color = nodeGroup == null ? null : d3.scaleOrdinal(nodeGroups, colors);
// Construct the forces.
const forceNode = d3.forceManyBody();
const forceLink = d3.forceLink(links).id(({index: i}) => N[i]);
if (nodeStrength !== undefined) forceNode.strength(nodeStrength);
if (linkStrength !== undefined) forceLink.strength(linkStrength);
const simulation = d3.forceSimulation(nodes)
.force("link", forceLink)
.force("charge", forceNode)
.force("center", d3.forceCenter())
.on("tick", ticked);
const svg = d3.create("svg")
.attr("width", width)
.attr("height", height)
.attr("viewBox", [-width / 2, -height / 2, width, height])
.attr("style", "max-width: 100%; height: auto; height: intrinsic;");
const link = svg.append("g")
.attr("stroke", typeof linkStroke !== "function" ? linkStroke : null)
.attr("stroke-opacity", linkStrokeOpacity)
.attr("stroke-width", typeof linkStrokeWidth !== "function" ? linkStrokeWidth : null)
.attr("stroke-linecap", linkStrokeLinecap)
.selectAll("line")
.data(links)
.join("line");
const node = svg.append("g")
.attr("fill", nodeFill)
.attr("stroke", nodeStroke)
.attr("stroke-opacity", nodeStrokeOpacity)
.attr("stroke-width", nodeStrokeWidth)
.selectAll("circle")
.data(nodes)
.join("circle")
.attr("r", nodeRadius)
.call(drag(simulation));
if (W) link.attr("stroke-width", ({index: i}) => W[i]);
if (L) link.attr("stroke", ({index: i}) => L[i]);
if (G) node.attr("fill", ({index: i}) => color(G[i]));
if (R) node.attr("r", ({index: i}) => R[i]);
if (T) node.append("title").text(({index: i}) => T[i]);
if (invalidation != null) invalidation.then(() => simulation.stop());
function intern(value) {
return value !== null && typeof value === "object" ? value.valueOf() : value;
}
function ticked() {
link
.attr("x1", d => d.source.x)
.attr("y1", d => d.source.y)
.attr("x2", d => d.target.x)
.attr("y2", d => d.target.y);
node
.attr("cx", d => d.x)
.attr("cy", d => d.y);
}
function drag(simulation) {
function dragstarted(event) {
if (!event.active) simulation.alphaTarget(0.3).restart();
event.subject.fx = event.subject.x;
event.subject.fy = event.subject.y;
}
function dragged(event) {
event.subject.fx = event.x;
event.subject.fy = event.y;
}
function dragended(event) {
if (!event.active) simulation.alphaTarget(0);
event.subject.fx = null;
event.subject.fy = null;
}
return d3.drag()
.on("start", dragstarted)
.on("drag", dragged)
.on("end", dragended);
}
return Object.assign(svg.node(), {scales: {color}});
}
chart2 = ForceGraph(data, {
nodeId: d => d.id,
nodeGroup: d => d.group,
nodeTitle: d => `${d.id}\n${d.group}`,
linkStrokeWidth: l => Math.sqrt(l.value),
width,
height: 600,
invalidation // a promise to stop the simulation when the cell is re-run
})
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