Working as a scientific software engineer in Max Planck Institute of Molecular Cell Biology and Genetic
data = FileAttachment("gate-data.json").json({ typed: true })
residues = data.residues
scores = data.scores
dat = residues.map((d, i) => {
return { residue: d, score: scores[i] };
})
Table(dat, {
format: {
score: sparkbar(d3.max(dat, (d) => d.score))
}
})
Table = Inputs.table // deprecated alias
Plot.plot({
caption: "What are the common lengths of songs?",
x: {
label: "Residue"
},
marks: [Plot.ruleY([0]), Plot.barY(dat, { x: "residue", y: "score" })]
})
chart = {
const svg = d3.select(DOM.svg(width, height));
svg.append("g").call(xAxis);
svg.append("g").call(yAxis);
const serie = svg
.append("g")
.selectAll("g")
.data([{ key: "gate", dat }])
.enter()
.append("g")
.attr("transform", (d) => `translate(0,${y(d.key) + 1})`);
const tip = d3tip()
.attr("class", "d3-tip")
.html((d, x) => x.residue);
svg.call(tip);
serie
.append("g")
.selectAll("rect")
.data((d) => d.dat)
.enter()
.append("rect")
.attr("fill", (d) => z(d.score))
.attr("x", (d, i) => x(residues[i]))
.attr("y", 0)
.attr("height", y.bandwidth())
.attr("width", x.bandwidth())
.on("mouseover", tip.show)
.on("mouseout", tip.hide);
return svg.node();
}
margin = ({ top: 30, right: 20, bottom: 100, left: 20 })
x = d3
.scaleBand()
.domain(dat.map((d) => d.residue))
.range([margin.left, width - margin.right])
.padding(0.1)
y = d3
.scaleBand()
.domain(["gate"])
.range([margin.top, height - margin.bottom])
.padding(0.1)
z = d3.scaleSequential(d3.interpolateOrRd).domain([0, d3.max(scores)])
legendHeight = 20
legendElementWidth = Math.round(
(width - (margin.left + margin.right)) / 2 / residues.length
)
// xAxis = (g) =>
// g
// .attr(
// "transform",
// `translate(${x.bandwidth() / 2},${height - margin.bottom})`
// )
// .call(d3.axisBottom(x).tickSizeOuter(0))
// .call((g) => g.select(".domain").remove())
// .selectAll("text")
// .attr("y", 0)
// .attr("x", -9)
// .attr("dy", ".35em")
// .attr("transform", "rotate(270)")
// .style("text-anchor", "end")
// .style("fill", "#777")
xAxis = (g) =>
g
.attr("transform", `translate(0, ${height - margin.bottom})`)
.call(d3.axisBottom(x).tickSizeOuter(0))
.call((g) => g.select(".domain").remove())
.selectAll("text")
.attr("y", 0)
.attr("x", -9)
.attr("dy", ".35em")
.attr("transform", "rotate(270)")
.style("text-anchor", "end")
.style("fill", "#777")
yAxis = (g) =>
g
.attr("transform", `translate(${margin.left},0)`)
.call(d3.axisLeft(y).tickSize(0).tickPadding(4))
.call((g) => g.select(".domain").remove())
.selectAll("text")
.style("fill", "#777")
d3tip = require("https://cdnjs.cloudflare.com/ajax/libs/d3-tip/0.9.1/d3-tip.js")
html`<link rel="stylesheet" href="//rawgithub.com/Caged/d3-tip/master/examples/example-styles.css">`
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