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Nicolas Fernandez
Public
Clustergrammer-GL
Edited
May 29, 2024
Fork of COVID-19 Transcriptional Signature Tenoever Data: A549
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Clustergrammer-GL
USDA Nutrients UMAP-HeatmapCitiBike Clustergrammer-GL and Deck.glClustergrammer-GL Visium Example
COVID-19 Transcriptional Signature Tenoever Data: A549
2,700 PBMC scRNA-seq Clustergrammer-GL and Enrichr NotebookNBA Shot Chart Clustergrammer-GLNBA Player Stats UMAP-HeatmapClustergrammer-GLClustergrammer2 Pyodide
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// gene_of_interest = 'something'
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// inst_gene_name = 'something'
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inst_gene_name
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gene_of_interest
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available_libs = [
'CellMarker_2024',
'ARCHS4_Tissues',
'GO_Biological_Process_2018',
'GO_Cellular_Component_2018',
'GO_Molecular_Function_2018',
'GTEx_Tissue_Sample_Gene_Expression_Profiles_up',
'KEGG_2019_Human',
'ChEA_2016',
'MGI_Mammalian_Phenotype_Level_4_2019',
'Disease_Perturbations_from_GEO_up',
'Ligand_Perturbations_from_GEO_up',
'LINCS_L1000_Chem_Pert_down',
'Ligand_Perturbations_from_GEO_down',
]
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// list_id = JSON.parse(new_post_response.body).userListId.toString()
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// network = FileAttachment("pre-calc-viz.json").json()
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inst_gene_name = JSON.parse(fetch_hzome.body).name
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inst_gene_description = JSON.parse(fetch_hzome.body).description
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fetch_hzome = {
let base_url = 'https://amp.pharm.mssm.edu/Harmonizome/api/1.0/gene/' ;
let full_url = base_url + gene_of_interest;
const response = await fetch(
full_url, {
method: 'GET'
}
);
return {
ok: response.ok,
body: await response.text()
};
}
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md`### Current mouseover: ${mouseover_row_name}, ${mouseover_col_name}`
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