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Sergei Pond

http://lab.hyphy.org

Public notebooks

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Plotting RELAX k-values on branches of the tree This notebook is a fork
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Sergei Pond
Dec 4, 2022•1
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Selection history of signature sites in V1/V2/V3 501Y lineages in… This notebook is a fork
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Sergei Pond
Feb 10, 2021
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GARD analysis result visualization This notebook is a fork
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Sergei Pond
Dec 11, 2023•1
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Summary of gene/segment level selection inference This notebook is a fork
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Sergei Pond
Feb 9, 2021
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Combined view of sites which may be experiencing convergence in N501Y clades This notebook is a fork
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Sergei Pond
Feb 5, 2021
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Combined view of sites under selection in N501Y clades
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Sergei Pond
Feb 4, 2021
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SARS-CoV-2 evolutionary features This notebook is a fork
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Sergei Pond
Feb 4, 2021
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Count samples which contain parts or all of the set of signature mutations This notebook is a fork
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Sergei Pond
Jan 28, 2021
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Data exploration tools for SARS-CoV-2 intra-host variation studies
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Sergei Pond
Jan 28, 2021
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Available datasets
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Sergei Pond
Jan 26, 2021
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Sets of sites in V1, V2, V3 501Y lineages This notebook is a fork
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Sergei Pond
Jan 24, 2021
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Exploring SARS-CoV-2 intrahost variation (patterns) This notebook is a fork
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Sergei Pond
Jan 20, 2021
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Exploring SARS-CoV-2 intrahost variation (individual variants) This notebook is a fork
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Sergei Pond
Jan 20, 2021
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Exploring SARS-CoV-2 intrahost variation (descriptive)
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Sergei Pond
Oct 25, 2023
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Exploring SARS-CoV-2 intrahost variation (spatial) This notebook is a fork
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Sergei Pond
Jan 19, 2021
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Untitled This notebook is a fork
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Sergei Pond
Jan 18, 2021
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Visualizing selection analysis results for evolution of the 501Y.V2 clade This notebook is a fork
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Sergei Pond
Jan 15, 2021
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Mapping amino-acid sequences to each other
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Sergei Pond
Jan 14, 2021
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Identifying signature mutations in SARS-CoV-2 genomic sequences.
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Sergei Pond
Jan 11, 2021
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Selection history of genes in SARS-CoV-2/COVID-19 genomes enabled by data from This notebook is a fork
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Sergei Pond
Jan 9, 2021•2
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Evolutionary annotation of B.1.1.7 SARS-CoV-2/COVID-19 genomes enabled by data from This notebook is a fork
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Sergei Pond
Jan 8, 2021•1
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SARS-CoV-2 structural viz toybox This notebook is a fork
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Sergei Pond
Jan 6, 2021
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Displaying aBSREL results using branch "censoring" This notebook is a fork
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Sergei Pond
Jan 5, 2021
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Visualizing preliminary selection analysis results for evolution of the South… This notebook is a fork
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Sergei Pond
Dec 28, 2020•1
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Evolutionary annotation of SARS-CoV-2/COVID-19 genomes enabled by data from
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Sergei Pond
Dec 23, 2020
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Natural selection analysis of global SARS-CoV-2/COVID-19 enabled by data from
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Sergei Pond
Nov 30, 2020•8
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Visualizing selection analysis results for evolution of human CoV This notebook is a fork
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Sergei Pond
Nov 23, 2020
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SRV variation model comparison on simulated data This notebook is a fork
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Sergei Pond
Nov 12, 2020
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SRV variation model comparison
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Sergei Pond
Nov 5, 2020
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Exploring SARS-CoV-2 error profiles
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Sergei Pond
Oct 9, 2020
Showing 91-120 of 170 notebooks
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