Published unlisted
Edited
Apr 8, 2022
sars_cov2_phylogeny = {
let root = await FileAttachment('cleaned_cov2_data.json').json()
let accumulate_fitness_mutation = (node,d) => {
node.date = new Date(node.date)
node.year = node.date.getUTCFullYear()
node.month = node.date.getUTCMonth()
node.depth = d
let children = node.children
if(children.length == 0) {
return node.mutational_fitness
}
let summed_fitness = 0
for(let c = 0; c < children.length; c++) {
let child_fitness = accumulate_fitness_mutation(children[c],d+1)
summed_fitness += child_fitness
}
node.mutational_fitness = summed_fitness
return summed_fitness
}
accumulate_fitness_mutation(root,1)
return root
}
cleaned_geo_data = await FileAttachment('cleaned_geo_data.json').json()
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Observable is your go-to platform for exploring data and creating expressive data visualizations. Use reactive JavaScript notebooks for prototyping and a collaborative canvas for visual data exploration and dashboard creation.
