2b:null 2c:["$","title",null,{"children":"epiCauses tracker [Code] [Platform] [YouTube] | Adalberto M. Filho | Observable"}] 31:[] 2f:{"id":"73df7f3c0170f78f","slug":null,"title":"epiCauses tracker [Code] [Platform] [YouTube]","thumbnail":"6788af816db29c469e6e34df397a7b265bd46ed9bca9b055996af2697439e314","access_level":"public","create_time":"$D2023-02-05T13:34:37.819Z","update_time":"$D2023-02-12T21:18:48.320Z","view_time":null,"first_public_time":"$D2023-02-05T13:34:37.819Z","has_unpublished_edits":null,"fork":{"id":"a92a1130c5b55281","slug":null,"title":"epiVerseTracker [Code] [Platform] [YouTube]","owner":{"id":"143bccc9aea741c5","login":"yasmmin","name":"Yasmmin Martins"}},"stars":0,"starred":false,"owner":{"type":"team","id":"349c06e448ff43e5","login":"filhoalm","name":"Adalberto M. Filho","avatar_url":"https://avatars-next.observableusercontent.com/6ef4311c34e035cd0620be3fd8db7caac28b87b7e1f146d00756bc9c2e628b42","tier":"starter_2024"},"version":179,"publish_version":null,"role":null,"authored":false,"authors":[{"type":"individual","id":"9072296977d51dd1","login":"filhoalm","name":"Adalberto M. Filho","avatar_url":"https://avatars-next.observableusercontent.com/6ef4311c34e035cd0620be3fd8db7caac28b87b7e1f146d00756bc9c2e628b42","tier":null}],"members":[{"type":"individual","id":"9072296977d51dd1","login":"filhoalm","name":"Adalberto M. Filho","avatar_url":"https://avatars-next.observableusercontent.com/6ef4311c34e035cd0620be3fd8db7caac28b87b7e1f146d00756bc9c2e628b42","tier":null,"role":"editor"}],"comments":[],"custom_thumbnail":false,"trashed":false,"lapsed":null,"subscribed":null,"forks":0,"collection":null,"type":"notebook","body":{"title":"epiCauses tracker [Code] [Platform] [YouTube]","cells":[{"id":0,"value":"

epiCauses tracker ^{[Code] [Platform] [YouTube]}

\n\nDevelopment notes for the epiVerseTracker platform with Adalberto Filho. See his initial notes for motivation and original plan.","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","output":"","database":"$undefined"},{"id":42,"value":"//tracker = import('http://localhost:8000/tracker/export.js')\ntracker = import('https://epiverse.github.io/tracker/export.js')","pinned":false,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":75,"value":"The modern ES6 module import mechanism is preferred here (see *tracker* above), but note the older CommonJS require would work as well as *tracker = require('https://epiverse.github.io/tracker/tracker.js')*. Should we bother?","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","output":"","database":"$undefined"},{"id":21,"value":"# Data Sources","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","output":"","database":"$undefined"},{"id":24,"value":"## CDC\n...","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","output":"","database":"$undefined"},{"id":26,"value":"## SEER\n...","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","output":"","database":"$undefined"},{"id":28,"value":"## IARC\nData is organized along three axes: Location, cancer types, and risk factors. The corresponding data resources are managed at IARC's Global Cancer Observatory.","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","output":"","database":"$undefined"},{"id":38,"value":"### Causes","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","output":"","database":"$undefined"},{"id":82,"value":"iarcCauseData=tracker.iarc.causesGetAll(false)","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":108,"value":"### Fetching data about carcinogenic agents","pinned":false,"hidden":false,"mode":"md","author":"$undefined","summary":"$undefined","output":"","database":"$undefined"},{"id":160,"value":"Plotly = require(\"https://cdn.plot.ly/plotly-latest.min.js\")","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":110,"value":"async function getTable(){\n var a = await fetch('https://raw.githubusercontent.com/filhoalm/monoapp1/main/data2102023.csv')\n var table = await a.text()\n table=table.replaceAll('\\r','').split('\\n').map( x => x.split(','))\n var header=table[0]\n table=table.slice(1).filter(x => x.length==header.length )\n var rows = []\n table.forEach( x => {\n var dat={}\n var i=0\n var h=''\n for (h of header){\n dat[h]=x[i]\n i+=1\n }\n rows.push(dat)\n })\n return rows\n}\n","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":115,"value":"table = await getTable()","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":124,"value":"function getColumnUniqueValues(key){\n var values = ['All']\n table.forEach( x => {\n var keys = Object.keys(x)\n if(keys.includes(key)){\n if( ! values.includes(x[key]) ){\n values.push(x[key])\n }\n }\n })\n return values\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":131,"value":"evidences = getColumnUniqueValues('evidence')","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":133,"value":"viewof selEvidence = Inputs.select(evidences, {label: \"Evidence Level\"})","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":138,"value":"sites = getColumnUniqueValues('cancer_site')","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":142,"value":"viewof selSite = Inputs.select(sites, {label: \"Cancer sites\"})","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":148,"value":"subtypes = getColumnUniqueValues('cancer_subtype')","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":150,"value":"viewof selType = Inputs.select(subtypes, {label: \"Cancer subtypes\"})","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":155,"value":"function getOrderedFilteredAgentsData(){\n var filtered = table\n if(selEvidence!='All'){\n filtered=filtered.filter( x => x['evidence']==selEvidence )\n }\n if(selSite!='All'){\n filtered=filtered.filter( x => x['cancer_site']==selSite )\n }\n if(selType!='All'){\n filtered=filtered.filter( x => x['cancer_subtype']==selType )\n }\n\n var agents={}\n filtered.forEach(x => {\n var keys = Object.keys(agents)\n if( ! keys.includes(x['agent']) ){\n agents[x['agent']] = 0\n }\n agents[x['agent']] += 1\n })\n var agentsDat={'x': Object.keys(agents), 'y': Object.values(agents)}\n return agentsDat\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"},{"id":157,"value":"{\n var filtered = getOrderedFilteredAgentsData()\n \n var trace = {\n x: filtered['x'],\n y: filtered['y'],\n name: 'Agents',\n marker: {color: 'rgb(26, 118, 255)'},\n type: 'bar'\n };\n \n var data = [trace];\n \n var layout = {\n title: 'Agents filtered with constraints',\n xaxis: {\n title: 'Agents',\n tickfont: {\n size: 14,\n color: 'rgb(107, 107, 107)'\n }},\n yaxis: {\n title: 'Occurrences',\n },\n legend: {\n x: 0,\n y: 1.0,\n bgcolor: 'rgba(255, 255, 255, 0)',\n bordercolor: 'rgba(255, 255, 255, 0)'\n },\n barmode: 'group',\n bargap: 0.15,\n bargroupgap: 0.1,\n width: width\n };\n \n const div = DOM.element('div');\n Plotly.newPlot(div, data, layout);\n return div;\n}","pinned":true,"hidden":false,"mode":"ojs","author":"$undefined","summary":"$undefined","output":"$undefined","database":"$undefined"}],"files":"$W31","stdlib":"1","titling":"auto"}} 30:"$2f:body"