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Sergei Pond

http://lab.hyphy.org

Public notebooks

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SARS-CoV-2 Research Contributions
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Sergei Pond
Aug 10, 2021
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Untitled
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Sergei Pond
Aug 6, 2021•1
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Comparing sets of called variants This notebook is a fork
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Sergei Pond
Aug 6, 2021•1
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Proportional Venn This notebook is a fork
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Sergei Pond
Aug 6, 2021•2
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ACTIV-TRACE sample analyses This notebook is a fork
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Sergei Pond
Aug 2, 2021
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Temporal evolution of selective pressures on SARS-CoV-2 genes
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Sergei Pond
Jul 30, 2021•1
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Trends in haplotype frequencies in SARS-CoV-2 data from
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Sergei Pond
Jul 26, 2021
Trends in haplotype background frequencies for mutations in SARS-CoV-2 data from This notebook is a fork
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Sergei Pond
Jul 26, 2021
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Compare coverages between mapped files
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Sergei Pond
Jul 12, 2021
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Frequency trends and selection detection of subsets of sites in SARS-CoV-2 genes This notebook is a fork
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Sergei Pond
Jun 15, 2021
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Untitled This notebook is a fork
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Sergei Pond
Jun 14, 2021
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Untitled
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Sergei Pond
Jun 12, 2021
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Frequency trends and selection detection of subsets of sites in SARS-CoV-2 genes
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Sergei Pond
Jun 8, 2021
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Intrahost allelic variant SARS-CoV-2 analysis for Estonian samples This notebook is a fork
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Sergei Pond
May 19, 2021•3
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Visualizing MSS model results for Drosophila genes This notebook is a fork
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Sergei Pond
May 3, 2021•1
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Visualizing selection analysis results for evolution of nCOV This notebook is a fork
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Sergei Pond
Apr 25, 2021•2
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Visualizing MSS model results for Drosophila genes This notebook is a fork
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Sergei Pond
Apr 25, 2021
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Combined view of sites which may be experiencing convergence in N501Y clades This notebook is a fork
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Sergei Pond
Apr 24, 2021
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Selector with confirmation
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Sergei Pond
Apr 21, 2021
Intrahost allelic variant SARS-CoV-2 analysis for Estonian samples This notebook is a fork
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Sergei Pond
Apr 20, 2021•3
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Plotting amino-acid states on tree branches based on SLAC inference This notebook is a fork
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Sergei Pond
Apr 7, 2021
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Frequencies of SARS-CoV-2 key S1 mutations enabled by data from
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Sergei Pond
Mar 10, 2021•1
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Trends in mutational patterns across SARS-CoV-2 genes enabled by data from
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Sergei Pond
Mar 9, 2021•1
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NYC super-infection analysis This notebook is a fork
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Sergei Pond
Mar 9, 2021
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Visualizing comparative selection analysis results for ciliate gene-family analyses This notebook is a fork
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Sergei Pond
Jan 10, 2023
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Displaying aBSREL results using branch "censoring" This notebook is a fork
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Sergei Pond
Feb 19, 2021
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Distributuion of intrahost variants in SARS-CoV-2 spike This notebook is a fork
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Sergei Pond
Feb 18, 2021
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Selection history of key mutations in Spike in SARS-CoV-2/COVID-19 genomes enabled…
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Sergei Pond
Feb 17, 2021
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Sites from Mutations in SARS-CoV-2 Spike: Implications for the COVID-19 Pandemic This notebook is a fork
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Sergei Pond
Feb 17, 2021•3
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Combined view of sites which may be experiencing convergence in N501Y P1 and P2 clades This notebook is a fork
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Sergei Pond
Feb 16, 2021
Showing 61-90 of 170 notebooks
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