Sergei Pond | Observable

Sergei Pond

http://lab.hyphy.org

Public notebooks

Public collections

Public notebooks

Sort

Showing 121-150 of 170 notebooks

Testing for differences in median between two samples

Oct 1, 2020

NGS post hoc analysis

Sep 17, 2020

Performance of diagnostic tests

Sep 10, 2020

Resolving sequencing error by consensus

Sep 10, 2020•1

Summary of SARS-CoV-2 genomic diversity

Aug 25, 2020

PRIME simulations

Jul 24, 2020

Comparing OGV dating results

Jul 20, 2020

Distribution of SARS-CoV-2 sequences that have differences from reference at a…

Jul 14, 2020

Visualizing selection analysis results for CoV evolution in bats

Jun 24, 2020•1

Tracking signature mutations in SARS-CoV-2 relative to the inferred progenitor…

Jun 18, 2020

Mutation arrivals in SARS-CoV-2 genomes

Jun 9, 2020

Genomic divergence of SARS-CoV-2 over time

Jun 9, 2020

Testing recombination in the pandemic SARS-CoV-2 strains

May 28, 2020•2

May 26, 2020•1

Summary of SARS-CoV-2 genomic diversity

May 12, 2020

Internal FEL on SARS-CoV-2 data

May 6, 2020

SRRs with many mid-range variants (multiple infections)?

Apr 18, 2020

CpG deficiency in beta-coronaviruses

Apr 16, 2020

Apr 5, 2020

COVID table export

Mar 26, 2020

Notice: this page has been deprecated in favor of a fully redesigned and updated…

Mar 24, 2020•11

Genomic diversity and divergence of SARS-CoV-2/COVID-19

Mar 23, 2020•3

Multihit paper empirical results

Mar 10, 2020

Multihit paper empirical results for substitutions

Mar 9, 2020•1

Example alignments for multihit paper

Feb 5, 2020

Multi-hit simulations

Feb 5, 2020•1

Plotting MEME EBF on branches at individual sites

Jan 20, 2020

Multi-hit simulations

Dec 13, 2019•1

Research and funding summary

Nov 19, 2019

Clustering faculty applications

Nov 18, 2019

Showing 121-150 of 170 notebooks