Public
Edited
Jul 11, 2024
{
d3.select('#wrapper2').selectAll("svg").remove()
// combine data
const data = [...adlb, ...advs, ...adae]
// canvas
const wrapper = d3.select("#wrapper2")
.append("svg")
.attr("width", dimensions.width)
.attr("height", dimensions.height)
const bounds = wrapper.append("g")
.style("transform", `translate(${
dimensions.margin.left
}px, ${
dimensions.margin.top
}px)`)
// scales
const radiusScale = d3.scaleSqrt()
.domain([1, maxCount])
.range([5, 20])
// marks
const forceData = beeswarmForce(data, xScale, radiusScale)
const dots = bounds.selectAll("dot")
.data(forceData)
.join('circle')
.attr('cx', d => d.x)
.attr('cy', d => d.y)
.attr('r', d => d.r)
.attr('fill', d => {
if (d.fill === 'labs') {
return '#969696'
} else if (d.fill === 'vitals') {
return '#FD8D3C'
} else {
return '#9E9AC8'
}
})
.on('mousemove', onMousemove)
.on('mouseout', onMouseOut)
function onMousemove(event, d){
const x = event.x
const y = event.y
toolTip
.style('left', `${x}px`)
.style('top', `${y}px`)
.style('display', 'block')
.html(
`<span>Day: ${d.ADY}</span>
</br>
<span>Count: ${d.count}</span>
`
)
d3.select(event.target).style("cursor", "pointer")
}
function onMouseOut(event, d){
toolTip.style("display", "none")
d3.select(event.target).style("cursor", "default");
}
// axes
const xAxisGenerator = d3.axisBottom()
.scale(xScale)
.tickValues(Array.from(tickData.keys()))
.tickFormat((d, i) => tickData.get(d))
const xAxis = bounds.append("g")
.call(xAxisGenerator)
.style("transform", `translateY(${dimensions.boundedHeight}px)`)
xAxis.selectAll("text")
.attr('transform', 'rotate(-45)')
.attr('text-anchor', 'end')
.attr('dx', '-1em')
}
<div id="wrapper3"></div>
toolTip = d3.select("body").append("div").attr("class", "toolTip")
xAccessor = d => d.ADY
colorAcccessor = d => d.count
xScale = d3.scaleLinear()
.domain(d3.extent(advs, xAccessor)) // in this case advs b/c the range is larger. will need a way to determine this
.range([0, dimensions.boundedWidth])
labsColorScale = d3.scaleSequential()
.domain(d3.extent(adlb, d => d.count))
.interpolator(t => d3.interpolateBlues(t + 0.5)) // use only the upper 1/2 of the blues scale b/c lower 1/2 is too light to see
vitalsColorScale = d3.scaleSequential()
.domain(d3.extent(advs, d => d.count))
.interpolator(t => d3.interpolateReds(t + 0.5))
aesColorScale = d3.scaleSequential()
.domain(d3.extent(adae, d => d.count))
.interpolator(t => d3.interpolatePurples(t + 0.5))
nudge = (x) => {
const random = d3.randomInt(4, 6)
return x + random()
}
maxCount = {
const maxCountAes = d3.max(adae.map(d => d.count))
const maxCountLabs = d3.max(adlb.map(d => d.count))
const maxCountVitals = d3.max(advs.map(d => d.count))
return d3.max([maxCountAes, maxCountLabs, maxCountVitals])
}
adlb = {
const raw = await FileAttachment("adlb.json").json()
const filtered = raw
.filter(d => d.USUBJID === '01-701-1192')
// .filter(d => d.ADY >= 0)
.filter(d => d.LBNRIND !== 'NORMAL')
const adlbRolled = d3.rollup(filtered, d => d.length, d => d.ADY)
let out = []
for (const [key, value] of adlbRolled.entries()) {
out.push({
ADY: key,
count: value,
series: 'labs'
})
}
return out
}
advs = {
const raw = await FileAttachment("advs.json").json()
const filtered = raw
.filter(d => d.USUBJID === '01-701-1192')
// .filter(d => d.ADY >= 0)
.filter(d => d.ANRIND !== 'NORMAL')
const advsRolled = d3.rollup(filtered, d => d.length, d => d.ADY)
let out = []
for (const [key, value] of advsRolled.entries()) {
out.push({
ADY: key,
count: value,
// data: filtered.filter(d => d.ADY === key) // so we can put whatever we want in the tooltips
series: 'vitals'
})
}
return out
}
adae = {
const raw = await FileAttachment("adae.json").json()
const filtered = raw
.filter(d => d.USUBJID === '01-701-1192')
.filter(d => typeof d.AESTDY !== 'undefined')
const adaeRolled = d3.rollup(filtered, d => d.length, d => d.AESTDY)
let out = []
for (const [key, value] of adaeRolled.entries()) {
out.push({
ADY: key, // really AESTDY but this is to keep things consistent across domains
count: value,
series: 'adverse events'
})
}
return out
}
tickData = {
const raw = await FileAttachment("adlb.json").json()
const filtered = raw
.filter(d => d.USUBJID === '01-701-1192')
// .filter(d => d.ADY >= 0)
.filter(d => d.LBNRIND !== 'NORMAL')
.map(d => {
return {
ADY: d.ADY,
VISIT: d.VISIT
}
})
.sort((a, b) => d3.ascending(a.ADY, b.ADY))
return d3.rollup(filtered, d => d[0].VISIT, d => d.ADY) // first arg is reducer, 2nd is group
}
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